What we finally did: Raised the engine using a full size basketball and an old school bicycle pump. we prepped the task by uncoupling the shaft, applying penetrating oil to each mount nut, used calipers to measure the elevation of the bottom of each engine bracket to the base of the threaded mount shaft, and backed out the nuts on the old mounts most of the way. To replace the aft mounts we removed their mount nuts, deflated the basketball, slid it under the engine far enough aft that it would mostly bear the load of those mounts, and slowly pumped up the ball. After the engine brackets were raised above the mount shafts, we removed the old mounts, cleaned the rails upon which the mounts sit, bolted each new mount to the rail but did not tighten, and gently deflated the basketball as the engine settled onto the new mounts. Repeated for forward mounts and then aligned the engine.
I went with the basketball approach (suggested by a friend at the marina) because I felt it would treat the oil pan and underside of the engine more gently than a scissor jack and some wood blocks. I was a wee bit skeptical at first, enough so that I threw a scissor jack in the truck when we went to work on the mounts. It stayed in the truck. I will definitely drag out the old basketball if I ever need to raise the engine again.