I must say, this is one of the kookiest threads I have read on this forum in a long time. Forget the question the OP poses, about damage to the engine mounts, etc. Why on earth would you "use up old fuel" by running it rhough the single most expensive piece of gear on the boat? If it's not good to use, why run it through the engine? And, if it's O.K. to run through the engine, why intentionally use it up? Is it no good? What's "old" about it? Who said to use it up and get new fuel?
How much fuel? This could take as much as two hours per gallon. And, if it's crummy, it will dirty up your filters.
If the fuel is no good, pump it out and get rid of it! Or, "polish it," which is to pump it through filters.
Wow.