eianm
when I did mine, I waited for a hot day...that softens things up..then I used 6 or 8 small hardwood wedges. I started them in the "loose" spots and then tapped them gently every 12-15 minutes or so. That provide consistent lift and stretched the adhesive, enough to get a blade or spring hook in to cut the sealant. Then tapped a bit more. and so on. It took well over an hour, but I had no damage to the hatch or the coach house roof.
Sadly when I got it out, I found that all the fasteners were so corroded, that I called pompanette/bomar and bought a new one from Defender, as they had it in stock and I was only "hatchless" for a couple days.
I used MS butyl to remount, after I did some epoxy injection in to the original screw holes as they did not come close to matching those of the new hatch. I also faired the radius of the "hole" and sealed up the area between the two layers of glass.
Hope this helps.