I too have zebras at my lake. I got to see how quickly they can cover casting cavities on an outboard motor bracket on a pontoon boat over the course of 8 or so weeks.
My understanding is that they cannot survive the heat of the motor, as 140 degree water will kill them, (western states invasive species treatment for fishing boats and ballasted wakeboard towboats) but I would be concerned about them restricting water intake right at the thru-hull.
As a result of my research with Maine Sail here on the forums, and talking with the folks at Groco while I was at IBEX, my plan when I get to it to combat them will be the following:
Replace the current clam-shell thru hull strainer with a straight non-strainer mushroom thru-hull, the bigger the better, (I was thinking I may as well go 1.5"... more on why the large size in a minute).
Install a new flanged seacock on the mushroom thru hull
Install hose to the seacock that is long enough to extend above the waterline when extended in-line with the seacock.
Install a basket-style strainer inside the engine compartment, and use a reducer on the outlet side of the strainer to get back down to the raw water pump's inlet fitting.
The idea is that if and when the little buggers get to a point whewrer they are restricting flow at the mushroom thru hull, you simply disconnect the hose from the basket strainer and use a long dowell through the hose, seacock, and thru hull to rod out and clear out the built up clump of mussels...
To be totally clear, most of this information came from elsewhere, it was very little original thought on my own, so credit where credit is due, to Maine Sail and others who helped me come to this solution.