Woody,
Structural glazing tape (Tremco SGT is one) is great to adhere the glazing to the hull. It's used to mount windows in skyscrapers and four sided flush-glazed skylights, among other things. But, it's back-bedded with Dow 995 (not 795), which is a structural sealant. Another great product is 3M VHB tape. This should also be back-bedded with silicone. Be careful about compatibility though. Some acrylic manufacturers don't recommend silicone with their product. And urethane sealants should never be used with polycarbonate.
If my boat was clean (and not tarped for a hopeful shot at painting tomorrow) I'd send you a pic of the job that I did. If you mask the edges of the joint, then tool the sealant, the result is a bead that looks like a well formed gasket. And be sure to tool the sealant. You'll hear many a testosterone-fueled boast of how good somebody can caulk, he NEVER has to tool the joint. The joint is NEVER warrantied by the manufacturer unless it's tooled, no exceptions. That's because it isn't waterproof until it's tooled.
I'm not an expert, but I know a thing or two. Among my other projects, I designed the top of the building on the right (Hearst Tower, NC) and designed and helped install the skylight on the left (Lucent Technologies, PA) which rises 80 feet before sweeping down and out in the rear.
Take your time and good luck!
Don,
Biddeford, ME