The high costs of upgrades
First of all You got yourself a good boat, with a lot of potential, there are many things, you can improve on, and all it takes is money any your time, the gray hatches and ports can be replaced, but they can also be repaired, I took 3/16" thk alum. plate 5" square, cut them diagonally rounded the edges, drilled a 5/16"hole 1" in on the longest edge on centerline, to repair broken clamp down pads, i also installed 1/2" thk smoked plexi, on hatch surface, usig 4 thru bolts and 16 sheetmetal screws from the inside and silicon. on the ports i've replaced the cracked clear windows and some of the hold down bolts and knobs. regarding the stuffing box, try first to replace the stuffing, cut the ends of the stuffing on a diagonal line not perpendicular and rotate each stuffing ring slit, 45 to 90 degrees from the previous slit. good luck.