The exchanger is at the end of the line.. Start with the thru hull. Remove the hose and briefly open. If you don't get a fountain, there is your first problem.. Be prepared to rod it out if there is anything less than a fountain.. Move on to the strainer.. If the screen is clogged, clear it.. Now test the strainer inlet as you did the thru hull.. Briefly open that thru hull with the strainer open.. Again, a fountain is what you want to see. Your next stop is the raw water impeller.. But since you weren't really cooking, I'd rather think the impeller was ok.. The exchanger is your last stop. It may need rodding out..
Discovering a blockage at the thur hull and clearing does NOT mean you've solved the problem until you run through the possible down stream gremlins..