Doug, from "Simple Stu"
I laud your efforts to make things clearer for recreational vessels. That said, I do believe you may be overcompensating for an issue that may not even exist. We, too, sail here on SF Bay with a tremendous amount of commercial traffic, in both the "main" Bay with Alcatraz in the middle, the south Bay (anchorage 9 can handle at least a dozen major ships), the Oakland Inner & Outer Harbors (10-12 side tie berths for container-ships - I motor out and sail back right alongside 6 of these), the Coast Guard station on CG Island (right across the estuary from my marina), ferries - both single hull & high speed catamarans), cruise ships, and some idiot stinkpotters (although I have a few good friends with motorboats who I consider highly qualified and careful skippers, I have found that the majority are NOT, but we have this blessing of regular summer winds which keeps most of them in harbor - thank goodness!). So, I can relate to what you are saying, but am curious as to how because the skipper of a boat can be stupid enough to pass between a tug & a (its?) barge would trigger your concern. Perhaps you can explain a little bit more so I can better understand.
And, of course, there's that old adage about more recent technology not necessarily trumping good old "eyeball navigation 101."
Assuming the commercial craft have their AIS ON (I've heard VTS here caution certain ships to turn them on!), I am also puzzled by your:
I am interested in solutions such as an AIS integrated chart plotter that provide some additional cues.
Not sure I get this one, since AIS superimposed on chartplotters has been "old hat" for a few years now. My friend sailed to Mexico from Vancouver in 2009 and had radar and AIS right on his Garmin chartplotter.
Am I missing something (again, wouldn't be the first time

)? Are you asking how it is done?
PS - Doug, very nice Pr. Louisa trip writeup on your blog, great photos, too.