I agree with Dale, this is not the place to use a permanent sealant, no doubt you'll have reason to remove the tabernacle at some point. You'll find if you use 3M 4200 or equivalent Sikaflex or Boatlife to re-bed you'll have one heck of a time removing the tabernacle.
On my old-style boat rather than use a longer 1/4" lag bolt I went to a 5/16" of the same length, I also drill through the front hole over-drilled it filled that hole with epoxy then re-drilled and use a bolt with a nylock nut on the inside topped with a acorn nut. I never had any trouble with it and use I removed three times while I owned the boat.