Y'all not only have my book, you've actually read it...I'm impressed!
You're quite right that I don't recommend holding tank vent line filters, especially on sailboats 'cuz the filters are toast immediately if they get wet and heeling can often send tank contents into the vent line.
I wouldn't worry too much about the close proximity of the waste and water tank thru-hulls...the type of thru-hull boat builders use on all tank vents are designed to keep sea water and any other contaminants out. But I like the idea of moving the vent line forward anyway...the shorter and straighter the better. Where is the tank located in the boat?
If you want to increase it to 1" you'll have put a new 1" vent fitting in the tank--actually pretty easy to do, thanks to a li'l gizmo called the Uniseal
UNISEAL --and of course the vent thru-hull has to be 1" and also be an open bulkhead or "mushroom" thru-hull.
Make sure the hoses are the source of your odor inside the boat before jumping to replace 'em. If it's been a while (never?) since you really CLEANED the bilge instead of just dumping some bilge cleaner and water into it and calling it done, it could be the culprit, 'cuz a wet dirty bilge is a primordial soup that can make a whole boat smell like a swamp or even a sewer. So do the "hot wet rag" test on the hoses.
More later...I have to be somewhere 10 minutes ago!
--Peggie