I didn't say that...
There's no reason why, if you want to make the extra effort to use the shower head, you can't leave the seacock closed and use it to flush the toilet. However, if you've ever used sea water and didn't flush it all out of the intake and channel in the rim of the bowl, it's gonna stagnate and stink...but even fresh water can stagnate and stink if it's left to sit in a hose long enough, especially in summer heat."I presume that a better practice would be to use raw water routinly for flushing, and use fresh for cleaning out the discharge line out of the bowl when closing down tha boat for a week of disuse. Do I understand this correctly?"Not quite. It's stagnant water trapped in the INTAKE line, pump and channel in the rim of the bowl that creates the worst odors after the boat has sat...so just cleaning out the discharge line won't solve that problem...you have to flush out the whole system. Since nothing that goes into the bowl is recirculated through the intake (thank God!), the only way to clean out the intake is to tee a source of clean fresh water into the intake line.As for your smelly gas "burps"...something downstream of the toilet is creating backpressure. If it's not the tank vent, it has to be somewhere in the head discharge line...and it's creating quite a bit of backpressure to send "burps" back through a joker valve in your toilet discharge that hasn't had any more wear than yours has had. Since the boat is new (less than a year old), IMO it's the dealer's problem to solve under warranty.I don't THINK that Hunter or any other boat builder would use corrugated hose in a sanitation system...they did 20 years ago, but know better than to use it now. However, if they did, that section of hose could be where your problem is...waste may have built up in it enough to cause problems. Is there a y-valve in the head discharge line? If so,it could be the culprit...something may be preventing it from completely opening the side to the tank. It's hard to do more than make educated guesses without actually seeing what's going on for myself...and that's about all I can think of from here.