
For the worthless contribution that mine will be, this is my two cents worth Mr Scott.
Any and all concerns that I have had (which have been abundant due to the lots of discussion about batteries and power and their management) about my set up just got reinforced from Maine Sail's contributions herein this post.
My stock set up from the manufacturer is a Yanmar 3JH3E 40 horsepower with an 80 amp alternator that Yanmar mounted on the engine. In the four and a half years we have had her, we have put about 5000 miles on her. Also, about 1000 hours on the engine. We are on the hook people, I will drop the hook and use the dink to a town dock before I'll drop 50 to 100 bucks for a day or two stay here and there. I have two unnamed 4Ds deep cycle wet cells that came from the factory with the boat. This last year I added an Energizer Marine application brand group 31 deep cycle wet cell to the system. I got it at Sam's club for $65. I have it wired as Battery 1 and the 4Ds are combined as Battery 2.
I don't know what kind of regulator the factory put on the boat, it works so I haven't needed to fix it (if it ain't broke

). I have a Charles 30 amp charger that when I am at the dock at home, I leave plugged in 24/7.
When on the hook, we use the batteries without regard to electrical power mangement and get pretty much 24 hours of use before the need to recharge. We are running a battery opperated refrigerator/freezer, an electric head, two water pumps, shower pump for the drain, lots of lights, TV's, stereo, the nav systems, and lights. My admiral is far from conservation minded; she has many other qualities and traits that offset this weakenss, so I live with it. She drinks enough beer for the two of us since I don't anymore and flushes the head at least once every two hours she is awake. When she isn't on board, I can last 48 hours without a recharge.
So far, I have no problems with my engine, it doesn't use oil and as I used it, my consumption has averaged out at 0.486 gallons per hour. My lube oil analysis has come back with indications of normal wear metals concentrations for the hours of use on it. I also change my oil often like Maine Sail does. I run the engine when in use for motoring at anywhere from 2400 up to 3600 RPMs. Someone once told me to run a diesel like I stole it; since I do, I suspect the exhaust elbow is pretty clean.
Since I have a dinghy with a merc 4 horse 4 stroke, I have to carry gas, unmixed. The EU 2000 Honda was an easy choice, quiet, economical, lightweight, the perfect power supplement to help get my 20 gallon hot water tank heated up in the winter, since my diesel sucking 45 degree water at 1400 RPM while topping off the batteries isn't going to cut it. I run it until I am done with, close the vent cap tightly and stow it below and haven't detected any aroma of fumes. When we drop the hook, it comes top side to get it out of the way. When I get ready to use it, I check the oil, top off the gas and fire it up. For the brutal times during the summer I can fire up the generator to run my cheapo WalMart window mount AC to cool the cabin down and it works like a charm. I find that now that I have the Honda, that I also use it to top off the batteries as well when it is running. I just flip the various breakers on and off so I don't overload it and trip it out. We put it up on the back end of the boat and so far have never had the CO alarm trip from it. We also have always been very careful to ensure that we have lots of fresh air being exchanged in the cabin when we use this generator. I really like the economizer throttle on it which is the only small engine appliance of its' nature that I have seen one on.
For cooking, we rely on LPG and a solenoid valve to run the oven, gas burners and BBQ on the stern.
I carry two ABC fire bottles mounted under each hatch in the lazerrette, one bottle in the companion way next to the engine, one bottle mounted next to where I lay my head in the owners cabin, one mounted at the nav station and one mounted on the bulkhead in the forward vee-berth. I have three others stowed in lockers, one of which I pull out and put on the dock when fueling up. In my line of business for the time being, I am able to swap these out with about 100 others that I have routinely inspected and serviced by a fire protection company that does contract work for me. These are 10 pound bottles, I don't mind the extra weight for the peace of mind and comfort level that they give me.