I brought in a Yanmar specialist to survey the engine of a boat I'm looking at, today. He found that they had installed the engine on the shipping motor mounts during the repower, instead of buying the correct ones for the operation of the boat. Perhaps this is your problem. If all else fails, I'd call a specialist in your engine and have him check that.
I'd bet dollars to donuts that there are a lot of repowers out there like that, perhaps breaking motor mounts more frequently than they should, Anyway, another case of spending a few hundred bucks to save a lot more, in this case, $ 7500.00! I certainly wouldn't have caught that one, even though I've been messing about with boats for more than 6 decades. He even offered me a job, as he only does Yanmar engines and I made the mistake of mentioning that GM diesels were more my specialty. lol