Either take off the fuel filter and fill it or
crack the outlet banjo fitting on the fuel filter holder body then locate the engine boost pump manual handle. Should be on the bottom and looks like a flat rounded piece of metal that will move back and forth. Pump it thusly:
with a wrench on the banjo fitting do one stroke of the pump, close the banjo fitting, release the pump manual handle or bring it back to it's starting point, open the banjo fitting, stroke the pump, ......... when the pump pushes fluid (air and fuel) open the fitting when the pump is sucking fuel from the tank close the fitting.
once you have removed all the air from the filter close that banjo fitting and move to the next one in the line, probably the injector pump. Repeat the above instructions till you get no air bubbles, close that fitting and move to the next one, probably the outlet on the injector pump, repeat till no air bubbles....... all the way to the injectors
You have probably driven air into the injector pump so this may take some time to get all the air out.
If you chose to go the remove the filter and fill it route you still have to go up the line removing all the air that you pumped in your attempts to start the engine.
Let the engine run for about 15 to 20 minutes at idle to insure every thing is working ok and there are no leaks.
Also, if you have a sealed oil sump below the engine I'd not try and catch all the fuel just clean it up later. It is going to make a mess any way you do it and I've found that trying to "keep it clean" is just a waste of time.