As Don notes, the "best" type of diesel fuel is the freshest and cleanest you can find. I buy just about all of my diesel for my Yanmar 2GM20F at a busy truck stop in the belief that it'll be fresher than most fuel that sits around in many marinas that don't sell a lot of fuel. Since this diesel has a cetane rating of 40, and Yanmar calls for 45, I, too add a bit of cetane booster. I also add "Pri-D" fuel stablizer as it is recommended by many diesel mechanics in this area.
To ensure the fuel is clean and water free, I triple filter it before it goes into the boat's tank using a West Marine water/crud separating filter (a poor man's BaHa filter). Changing primary and secondary filters, as well making sure the "O" ring on the deck fill cap is in good shape, pays real dividends in avoiding fuel-related engine problems.