One thought is that wiring 2 batteries in parallel provides one larger battery, and hence less discharge on either one.
Another thought is that having 2 batteries wired on separate switch positions, gives some redundancy should one battery get run down or have some sort of internal short.
You don’t mention if you have a separate starting battery either…something we need to know to answer more completely.
For me, I went through several iterations with my batteries…
* Lead acid - 2) 100Ah batteries, on separate switch positions. Then went to
* 6-volt golf-cart batteries. These needed to be wired in series to get 12-volts. On one switch positions and no starter battery.
* Still used the 6-volt golf cart batteries in series, then added a 12-volt battery as a backup starter battery (on B switch terminal).
* Moved to Lithium Iron Phosphate batteries…kept the 12-volt lead acid battery, now wired to the starter with a separate cut-off switch…and 2) 100Ah LFP batteries wired in parallel.
* This coming season, I have a single 314Ah LFZp battery to replace the 2) 100Ah batteries. No paralleling issue to deal with hopefully. And I retained the 12-volt lead acid battery for starting the engine.
Greg