Send the oil off and analyze it. Keep very close watch over your time schedules, etc, and then dump the oil again after X hours, (not a thousand, not even close), and sample the next batch. A benchmark will help, and heavy contaminants in the second pull will be a better number. Truth is, a mechanic needs to be very, very careful of every thing he uses in this extraction process, so as not to clutter the field.
(Chances are, the oil has been hot for quite some time, thereby 'burning' it because the gearbox has clutches in it. Despite what Yanmar 'says', if the oil is coming back tar black before its recommended service interval, I would just change it more often. I would hate to think I trashed a five grand gearbox over twenty bucks worth of oil).