Epoxy
You don't really need to seal the holes with epoxy, it just waterproofs the core of your deck if you do. If water gets down in there and is allowed to fester, it's going to be a huge mess. at worst, you'll suffer delamination, where the outer and inner layers of fiberglass seperate, and at worst, you can have core failure, and your deck could collpase around the hardware. If you're careful to inspect your sealant a few times each season, you can probably keep water penetration to a minimum. When I was new to boat repairs, etc, I was hella scared of epoxy...like it was some mystical substance that mere mortals shouldn't mess with. As a result, I was very hesitant to even attempt to use it. But once I read about it and started using it, I realized that epoxy should be embraced by the fiberglass boatowner. It's wonderful stuff. So if you're in a similar situation, and you're not really comfortable using epoxy, I say read up on it and get comfortable, because you're missing out. System Three has a great trial kit that you can buy for $25 that has a good-sized sample of a few of their main epoxy-based products, everything you need to get started with epoxy and/or fiberglassing, as well as a well-written Epoxy Book that talks all about how to use epoxy, etc. The kit also comes with a $20 rebate coupon off your next purchase of epoxy. Go to www.systemthree.com and click on "SilverTip Trial Kit". That's what I used to learn about epoxy and fiberglassing, and as I'm sure you can tell, I really recommend it.