Tethys3,
Congratulations on your purchase of a most excellent boat!
I think you are referring to the plumbing under the sink in the head. There are three lines running to the bilge pump, each with a ball valve, all connected to the same manifold. Normally you would leave open the valve that opens to the line running from the bilge, and close the other two. The other two lines run from the refrigerator drain and the shower drain. When you want to pump out the shower drain or the refrigerator (I usually use ice), close the bilge line and open the line you want to use, run the pump as needed, and then close the valve you opened, and reopen the bilge line valve. The shower has its own switch for the pump on the front of the sink. Pull out the know to run the pump.
There are also three thru-hulls below the head sink. One is for the sink drain, which should be simple to follow. The others are for the head intake and discharge. These three thru-hulsl are all in a row.
I am referring to the lines as they are laid out in my 2000 Beneteau 311, Footloose. I assume yours are virtually identical.