Thats great advice. I would also comment ...
Great advice from Benny. Note 1: don't be moving that battery switch while the engine is running, could ruin your alternator.Note 2: There should be few reasons to put the switch on BOTH (e.g. no other way to start engine). If you do put on both, remember to put it back to 1/2/ or OFF. Note 3: If you want to get a little fancier, add to Benny's solution a Blue-Sea battery combiner between battery bank #1 and #2, and connect your alternator directly to bank #1. The combiner will sense a charging voltage is present on Bank #1, and offer the power to Bank #2 simultaneously. When no charging voltage it will disconnect. Benefit, no matter your battery switch is on "1" or "2", your alternator will charge both batteries. It also helps you religiously avoid placing the switch in the BOTH position, which is bad for your batteries given the likely difference between their voltage potentials in the two banks. (also, with the alternator tied direct to bank #1, now you can move that battery switch while the engine is running)Note 4: None of these options are ideal, for getting the maximum life out of your batteries. For example, using your deep cycle to start your engine ... starter batteries are designed differently then house batteries for a reason.