In most cases the batteries should be kept separate-- one deep-cycle for 'house' circuits and one for engine-starting circuits. If you have such a setup, under no circumstances should they be tied together by any wiring whatsoever. That includes the 1-Both-2-Off switch too. (The only exception is if you have a 'smart' two-bank charger.) These two different types charge and discharge at different rates and in different modes. Keep them separate..
Diana, If both batteries are flooded lead-acid (even if one is "starting" and the other "deep cycle") surely they can be connected together for charging, can't they?
I have a Group 27 AGM for starting, and two G27 flooded for house. I was advised on this site, that there should be no problem connecting them together (even though it may not realize the full potential of the AGM).
The reason I connect them together for charging is that when I don't, and I leave the switch on "1", then the load from my use of appliances comes out of the "1" battery and is not topped up by the charger. Or, if I switch is set to "2" the load comes out of the "2" battery and is not topped up.
This surprises me, and I would like to know why, but in the meantime charging on "ALL" solves the problem.
Do you, or anybody else, have any ideas why this may be? The battery charger is stock for a 2006 Hunter 33 - ProMarine, Protech 4. Model 1230, part # 61230. Output 30A. It does have two independent charging circuits.
I'm also surprised that you say that the deep cycle will last longer if put through deep cycles. I've always thought that a lead acid should preferably be kept as nearly full charged as possible for longest life. Any comments?