do not fuse the alternator wire. if the fuse blows, the alternator can also...(not actually blow up, but burn out the regulator or diodes)
unlike an old generator system, an alternator should never be electrically disconnected from the battery while its working....
If the alternator runs direct to the battery or batt side of the switch the alt really needs to be fused at the battery or switch end. If following current safety standards this is a
requirement.
Any over current protection (OCP) / fusing should be a bare minimum of 125% of the alternators max output but preferably 150% or more. If this fuse blows, you wanted it to, because it likely prevented a fire..... In normal use it will be next to impossible to blow this fuse with the alternator.
These fuses are NOT to protect the alternator/device they are there to protect the wiring as are battery bank fuses and most OCP on a boat.....
Alternators, like solar or wind, are "self limiting" devices and thus do not require a fuse at the alternator end of the wire.
If the alt output wire gauge matches that of the battery switch wiring, eg: 1GA alt wire and 1GA battery cable wiring, then the fuse on the house bank can safely act as over current protection for both wires.
If the alt wire is 6GA and the battery wire is 1GA then the alt wire will need its own fuse at the battery switch or at the battery bank.
Keep in mind that many battery switches were not designed with a post height intended to accommodate much
large lug stacking.
In addition to the over current protection my installations include a "service switch" in the alt B+ so that the engine can be shut down for instances when a tech or yourself are working on it. I generally use the Blue Sea mini battery switches and locate them in the engine bay close to the alt so it can easily be seen by a tech. It is also labeled "Alternator Service Disconnect"..
This is an example of a house bank positive bus, alternator OCP and an alternator service disconnect switch.