I don't think it is clear at all. I believe my manual says to throttle it fully and then back it back down and repeat for 3 times.
Here are some quotes on the stopping procedure from three different Yanmar manuals. As you'll see, the suggestions are similar though not identical in all cases.
From the Yanmar GM/HM Workshop Manual (p. 44): "Note the following items when stopping the engine. 1. Place the transmission in neutral, then allow the engine to idle for five minutes before stopping the engine. 2. Momentarily raise engine speed to blow out any residue in the cylinders, then pull the engine stop knob or lever."
From the Yanmar Service Manual (1GM, 2GM, 3GM) (p. 11-11): "1. Before stopping, put the clutch in NEUTRAL and run the engine at approximately 1,000 rpm for about 5 minutes. 2. Before stopping, temporarily raise the speed to the rated speed to blow out residue in the cylinders. Then stop the engine by pulling the engine stop lever to cut the fuel."
From the Yanmar GM Series Operation Manual (p. 38): "1. Reduce the engine speed to low idle and put the shift control lever in NEUTRAL. 2. Accelerate from low speed to high speed and repeat five times. This will clean out the carbon from the cylinders and the fuel injection nozzles. 3. Allow the engine to run at low speed (approximately 1000 rpm) without load for five minutes. 4. With the key in the ON position, pull and hold the engine stop know until the engine has come to a complete stop. After the engine has stopped, turn the key switch to OFF."
Hope this helps.