I have that problem too
The 2GM in my H31 vibrates as well. Sometimes it seems worse, sometimes it seems better. I usually try to run in an RPM range that minimizes the vibration. Usually faster is better.Try looking an the engine while it is running. It may tell you something.When I first got the boat it was really bad. I eventually found one of the engine mount nuts in the engine sump! It had loosened up and fell off! That in itself was causing serious vibration. I put them both back together with locktite on the bolts. So, check the engine mounts for looseness.I know there is too much play in my cutlass bearing as well. Maybe some of the vibration will subside after replacing the bearing at the next haulout. So, check the cutlass.I also used to have a loud clanging while running. The added sound made it seem like the vibration was much worse. I tracked that down to a loose tray in the galley toaster oven. I stowed it differently and the sound level must have dropped 40dB! So check for things that are vibrating other than the engine.Lastly, I think it seems reasonable to believe that every engine has its good and bad spots on the throttle lever. Mine certainly does, and I try to stick to the good spots while running. Also, I'm not sure we should expect a 2 cylinder diesel to run as smooth as a large gas engine like in a car. This being my first sailboat and diesel engine, I'm not sure half the time what I should expect from it. Please post whatever it is that you ultimately find so I can look for other possibilities on my boat.Paul