Is the water in the bowl, clean or dirty?
If it's clean, Ron's prob'ly right...it's coming in via the intake. If it's dirty, the air valve in the toilet may need cleaning or replacement...that's even more likely if you're also feeling any backpressure when you flush.If it IS intake water, both of you need to install a vented loop in the intake that's at least 8-12" above the waterline at any angle of heel. When the bowl is at or below the waterline, relying on remembering to turn the dry/flush knob to dry is the best way I know to sink the boat--especially if you also forget to close the intake seacock when you leave the boat. The loop has to go between the pump and the bowl, btw...NOT between the thru-hull and the pump.