Kevin, I removed the seal
and re-glued and screwed it straight.In relation to the entrance of water, in my boat the tracks seem to be well leveled and the hatch has two thin plastic stripes glued to it outside of the tracks that act to deflect water down. I did note that the hatch, when closed, can be pushed up 1/4 in. Although that could possible result in water coming in when heeling it has never happened because so far I have been lucky and have not had much green water on my deck (touch on wood). In any case, I am planning to instal a couple of Teflon wedges at the companionway end below the teak handrails that will push the hatch down when closed and prevent it from separating from the track.If I was you, I would remove one of the tracks and reinstall it level with the other one. Other wise you may end up with a lot of friction if the hatch weight ends up supported by the new seals Looking forward to hear from you.