Could be
IF your boat cover is anything like mine, canvas and drapes over the sides, that the cover- covered the vent line of the diesel tank which would help to trap the fumes to inside the boat and if you (or the yard) had fogged the motor prior to storage that the condensation (if not leaks) could have (for lack of words) washed some of that into the bilge causing the oily specks of water in the bilge.But a good look over the fuel system wouldn't do any harm after a good day of open hatches and ventilation.Another thing to consider is that if your diesel gelled up because of the cold and if there was some water in the lines, that it could have expanded and forced something out of the filter, drain cocks or any other fitting,