Not a Good Idea
Running the Yanmar for charging is a bad idea. There has been a lot of talk here, lately. The common consensus is that your Yanmar, and most diesels, should not be run for protracted periods unless under load. And then, ideally, at around 75% of maximum rpm. There were many reasons posted, incuding mixing elbow clogging, increased wear, carbon build up, etc. Check the archives, but this was one of the few topics that almost everyone agreed upon! This is also consistent with recommendations from Nigel Calder, Seloc manuals, etc.So, how do you charge your batteries? My solution was changing the stock alternator with a 100 amp high output alternator. When sailing, I average about one hour of motoring including docking, navagating under bridges adn while anchoring. The new alternator gives me as much charging in one hour, as 4-5 hours of running with the original alternator. You can also investigate solar panels or wind generator depending on your needs and usage.