Probably a Hit
Dan: Thanks for your note. I am not aware of any "clunk" with my transmission issue, but then much of the problem has developed while the boat has been out on charter. However, I did have a problem last year with a broken strut and a bent shaft. Suspicion was that it was probably due to a "hit" while the boat was underway. Hunter's view was that there has been no history of broken struts but that a piece of driftwood (or similar) would cause a loud thud and would potentally throw the shaft off. After about 3 weeks the strut apparently went, probably due to the impact plus vibration etc. I think I would check your prop first, then investigate the shaft/strut.
Tom