I don't think your cutlass would be adding that much in terms of vibration (though I've been wrong before!) I'd suspect shaft support bearings, stuffing box, engine mounts.
If I recall correctly, the Y-25 has the engine up front like the Y-30, yes?
I had some pretty severe vibration/noise when I first bought the boat. Discovered the pillow block (shaft support bearing) near the engine had some play in it. Also my diesel mechanic pointed out that the shaft should have a second pillow block as the shaft was over the recommended unsupported length (packing gland had been replaced with a dripless shaft seal hence no real support at the rear).
So when next on the hard, pulled the shaft, replaced and added a new pillow block. Not a cheap project due to the frozen shaft/engine coupling (finally had to be cut out) but .... huge difference in noise & vibration. Still get vibration at certain revs, but then it is a single cylinder diesel after all!
cheers,
jcm