Don't even think of turning on your water pump!
You do not want this stuff in your fresh water plumbing...fresh water hoses are not resistant to permeation from solvents etc. If you want to follow Bob's instructions, remove the discharge hose from the tank and drain the water tank into the bilge...detergent will emulsify it and give you an excuse to really CLEAN the bilge for a change.
Then follow these instructions to recommission your system...which you should do every spring anyway:
The following recommendations conform to section 10.8 in the A-1 192 code covering electrical, plumbing, and heating of recreational vehicles. The solution is approved and recommended by competent health officials. It may be used in a new system a used one that has not been used for a period of time, or one that may have been contaminated.
Before beginning, turn off hot water heater at the breaker; do not turn it on again until the entire recommissioning is complete. Icemakers should be left running to allow cleaning out of the water feed line;
however the first two buckets of ice—the bucket generated during recommissioning and the first bucketful afterward--should be discarded…bleach does absolutely nothing to improve the flavor of good Scotch!
1. Prepare a chlorine solution using one gallon of water and 1/4 cup (2 oz or 25 ml) Clorox or Purex household bleach (5% sodium Hypochlorite solution ). With tank empty, pour chlorine solution into tank. Use one gallon of solution for each 5 gallons of tank capacity. (Those are the “official” directions. They work out to 1 quart or litre of bleach/50 gallons of water , which is MUCH easier to calculate!)
2. Complete filling of tank with fresh water. Open each faucet and drain cock until air has been released and the entire system is filled. Do not turn off the pump; it must remain on to keep the system pressurized and the solution in the lines
3. Allow to stand for at least three hours, but no longer than 24 hours.
4 Drain through every faucet on the boat (and if you haven't done this in a while, it's a good idea to remove any diffusion screens from the faucets, because what's likely to come out will clog them). Fill the tank again with fresh water only, drain again through every faucet on the boat.
5. To remove excess chlorine taste or odor which might remain, prepare a solution of one quart white vinegar to five gallons water and allow this solution to agitate in tank for several days by vessel motion.
6. Drain tank again through every faucet, and flush the lines again by filing the tank 1/4-1/2 full and again flushing with potable water.
People have expressed concern about using this method to recommission aluminum tanks. While bleach (chlorine) IS corrosive, it’s effects are are cumulative. So the effect of an annual or semi-annual "shock treatment" is negligible compared to the cumulative effect of holding chlorinated city water in the tank for years. Nevertheless, it's a good idea to mix the total amount of bleach in a few gallons of water before putting it into either a stainless or aluminum tank.
People have also expressed concern about the potential damage to rubber and neoprene water pump parts. Again—the cumulative effect of carrying chlorinated water is far more damaging over time than the occasional “shock treatment.” And it’s that cumulative effect that makes it a VERY bad idea to add a little bleach to each fill. Not only does it damage the system, but unless you add enough to make your water taste and smell like a laundry, it’s not enough to do any good. Even if it were, any “purifying” properties in chlorine evaporate within 24 hours, leaving behind only the corrosive properties.
An annual or semi-annual recommissioning according to the above directions is all that should be necessary to keep your water tasting and smelling as good as anything that comes out of any faucet on land. If you need to improve on that, install a water filter. Just remember that a filter is not a substitute for cleaning out the system, and that filters require regular inspection and cleaning or replacement.
To keep the water system cleaner longer, use your fresh water...keep water flowing through system. The molds, fungi, and bacteria only start to grow in hoses that aren't being used. Before filling the tank each time, always let the dock water run for at least 15 minutes first...the same critters that like the lines on your boat LOVE the dock supply line and your hose that sit in the warm sun, and you certainly don't want to transfer water that's been sitting in the dock supply line to your boat's system. So let the water run long enough to flush out all the water that's been standing in them so that what goes into your boat is coming straight from the water main.