Yes, definitely have had that on H356 with the same engine. In my considered opinion, it's related to hull flex. Mounts, shaft alignment, etc., etc., all check out, and still there is intermittent heavy vibration at certain revs, in certain conditions. What changes: the hull, only sliightly. Remember that just a fraction of an inch can throw things off. There's also the obvious reason that I've seen some flex when the boat goes on the skid, again, even though everything is checked out first. and Hunter has acknowledged some flex, at least in some early numbers of my model.
Another reason I feel hull flex is to blame is that things got a lot better this year when I installed on of these, a flexible shaft coupling by PYI.
http://www.pyiinc.com/index.php?action=shaft-coupling§ion=rd_marine It makes sense that this device would smooth out variable flex-caused problems. Unlike a realignment, which is fixed, this provides some flexibility to handle problems as they come and go. But regardless of the cause, this thing has really smoothed out my reves. It is simple to install, and I highly recommend it.