Drilling lots of holes through the area will allow air in to help dry it out. It may take two or three years, but if you keep it from getting wet in the interim, it should work. Water has worked its way in there over a LONG time. Getting it to dry out, even with lots of holes, is going to take longer than you think. The best way to attack a problem like this is to open up as much of the damaged/wet/damp area as possible by removing one the layers of fiberglass that encapsulates (or which used to encapsulate) it. If you can go at it from a place that doesn’t show, from underneath the deck for example, it avoids having to rebuild and re-create the deck nonskid pattern so the repair doesn’t look nasty. From your picture it appears that the deck and nonskid have already been damaged so perhaps taking it off the top might be the way to go: the cracks have to be repaired anyway. A dremel tool should cut the fiberglass fairly easily, but you want to remove as much as possible in one piece so that you can re-use it to keep the repair from looking like too much of a mess. You will want to cut the fiberglass back to where there is dry plywood, and then remove all the wet/rotted/moist/delaminated plywood that you find. This may involve exploring to find where the water is coming in and plugging that leak. You may want to bevel the edges of the repair in order to keep it strong - the area around the cockpit gets a lot of abuse. Cut new plywood to fill in the space and set it in place with epoxygoop. Then replace the fiberglass deck piece(s) that you cut out and ‘glass them back in with fiberglass tape and epoxy. This is where doing a neat job gets difficult, and why pros charge so much. You may want to gelcoat the cuts so they don’t look so bad. Paint is another option, but painting turns into a Sisyphian task.