Fairly common problem with Univeral engines ....
This will be an intermittant problem IF 'slab rust' develops in the exhaust manifold. Cast Iron when its poured into its mold cools in a 'layered' fashion rendering the casting like an onion .... stratification of the cast iron. When the intake manifold begins to rust the rust will propagate along the zones of stratification and huge 'slabs' of rust will come off; and, will either fall to the bottom of the manifold or will come off and migrate to the area of the water exit .... blocking it or partly blocking it. When you shut down the engine the slabs will sometimes fall to the bottom only to 'rise again' sometime later to block the water exit. This 'condition' is made worse by 'drying out' the engine for long term or winter storage. Cast Iron shouldnt ever be dried out but should be stored with an antifreeze with LOTS of rust inhibitor in it. Normal engine temperatures will form ferrous oxide (black rust) which is a protective coating. Allow the engine to 'dry' and you form ferric rust (red rust) which is very harmful as its less dense than the cast iron and can develop extreme pressure when it forms ---- thus 'peels the onion' and produces the 'slabs'. If this blockage occurs, consider that slab rust has begun to form. Remove the manifold, invert it and with a stiff wire into the water passages go in and break up all the 'slabs'. To insure that the manifold hasnt developed 'pin holes' between the gas side and the water side (can drain back into the cylinders if pinholed - will destroy the cylinders) apply a pressure gage and a water line with a valve, block either the inlet or outlet, apply pressure, shut the valve and watch the gage. If the gage 'drifts' to zero then you have a pin hole (and also should see some water emit over time from the 'gas' side) and you then need a new manifold. How to check for blocked exhaust manifold, etc.: Run engine at near full cruising rpm. Take a bucket of known volume (gallons, etc.) to the exhaust outlet at the stern of the boat, with a stopwatch, etc. record the time that it takes to fill the bucket. Such an engine should have about 1 gallons per minute of cooling water coming out the stern outlet. ANYTHING blocking the cooling water loop will yield less than 1 gallon per minute. So if less than 1 gallon per minute, you have a blockage: slab rust in the exhaust manifold, broken pump impeller lodged in the line, coked water injection nozzle, junk sucked into the loop, etc. etc. etc. For most other engine in boat up to ~35 ft. the cooling water should be about 3 gallons per minute; the 5411 is called the 'pisser' due to its very low cooling water flow.The raw water cooled 5411 (and other raw water cooled engines) also forms carbonates inside the manifold which will eventually block the manifold and cooling water passages inside the engine .... either use a commercial boiler descaling compound (Marsolve or Rydlyme) OR take it off and to a 'radiator' shop and have it cleaned out by ultrasonic methods. Try NOT to use muriatic or hydrochloric acid to 'pickle' the salt out of the engine as they will also dissolve 'base' metal. Use muriatic or hydrochloric only if you cant find a decent boiler descaler. Carbonates are insolubles that 'drop out' from 'raw water' or seawater when its temperature is over 145 degrees F .... this is how 'rocks' are formed in nature. If your engine is 'raw water' cooled, then you should change the thermostat to one that fully opens at 135 degrees F. ... this will allow the cooling water to be UNDER the magic 145 degrees .... not perfect but will much lessen the 'salt' / carbonate build up. Dont ever drain the water to store a cast iron engine ... fill it with 50:50 antifreeze with lots of rust inhibiter to keep the ferrous (black/good/protective) rust intact. Good hunting.