Aha--BINGO!! I know what the problem is! And installing a vented loop in the intake is the cure for the problem. I'm not surprised there isn't one, 'cuz although every other toilet mfr's installation instructions require an intake vented loop on all toilets installed even partially below waterline, Groco is the only toilet mfr whose installation instructions don't even mention it.
You'll see where it has to go in the drawing on p.3 of the Jabsco manual toilet owners manual
Jabsco Manual Twist & Lock owners manual ...Figure 2 on p. 5 in the Raritan PHII owners manual
PH II Owner’s Manual ...and Figure 5 on page 5 of the Raritan PH SuperFlush (newest version of the PHII)
Raritan SuperFlush Owners Manual As you'll see, it's in the same place in all of 'em: between the pump and the bowl (if installed between the thru-hull and the pump it interferes with the pump's ability to prime). It needs to be at least 6-8" above waterline AT MAX HEEL, not just when the boat's at rest..which puts it about 2-3' above the bowl on most sailboats. That requires replacing the short piece of hose that Groco used to connect the pump to the bowl with two lengths of 3/4" sanitation hose long enough to put the loop where it has to go
(see attached photo for the most common location...the smaller loop is the intake...a discharge vented loop is only needed if you flush directly overboard when at sea beyond 3 miles).
I'm wondering if you know what the little lever on the side of pump at the top does..
That's the wet/dry control (aka "dry/flush" control on some toilets). It only allows flush water to come in when it's in the "wet" or "flush" position...blocks the flow of flush water when in the "dry" position. It can fail with age, but that's only one of the reasons that it's NOT a substitute for the vented loop because people can accidentally leave it in the wet mode, but it does prevent water from filling up the bowl while it's in the dry mode. If the the wet/dry lever doesn't block the flow of flush water when in the "dry" mode, the lever isn't moving the cam to block it.
A vented loop's primary function is to break a siphon... Priming a toilet pump can start a siphon. The loop offers the added protection of creating a "hill" in a line that's too high for rising water to climb over. It also provides a fail-safe that a properly working wet/dry valve can't: it keeps water out of the bowl if the wet/dry valve is left open...which can happen 'cuz humans are fallible. If they're lucky, people are aboard to notice that shoes are afloat in the cabin. (I remember crewing in a club race and needing the use head in the nick of time to close the wet/dry valve before the bowl overflowed...the people on the Tartan in the next slip weren't quite that lucky...they were manning mops when we came in...one of their kids had left the toilet in the wet mode.) But more than one boat has sunk its slip 'cuz tired people got a little careless when closing up the boat or a guest needed to use it "one last time..."
--Peggie